DNA Binding Motif
| Accessions: | MA0743.3 (JASPAR 2024) |
| Names: | SCRT1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 10 |
| Consensus: | kCAACAGGTG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 4413 7425 16396 31975 k 02 1456 54835 1297 2621 C 03 45606 8751 1835 4017 A 04 57271 370 1566 1002 A 05 213 59557 224 215 C 06 58758 234 159 1058 A 07 7017 557 51330 1305 G 08 1664 466 56500 1579 G 09 883 1098 259 57969 T 10 7813 3296 41190 7910 G |
| Type: | Heterodimer |
| Binding TFs: | Q9BWW7 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) Q9BWW7 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) Q9BWW7 |
| Binding Sites: | MA0743.3.1 MA0743.3.10 MA0743.3.11 MA0743.3.12 / MA0743.3.6 MA0743.3.13 / MA0743.3.15 / MA0743.3.17 MA0743.3.14 / MA0743.3.9 MA0743.3.16 MA0743.3.18 MA0743.3.19 MA0743.3.2 MA0743.3.20 MA0743.3.3 MA0743.3.4 MA0743.3.5 MA0743.3.7 MA0743.3.8 |
| Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.