DNA Binding Motif

						

			
Accessions: 6t78_A (3D-footprint 20231221)

			
Names: Transcription factor SOX-11
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of human Sox11 transcription factor in complex with a short DNA fragment
Length: 8
Consensus: TaAATTgT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     59      9      9     19      a
03     96      0      0      0      A
04     96      0      0      0      A
05      9      9      0     78      T
06      0      0      0     96      T
07      9      9     57     21      g
08      0      0      0     96      T
Binding TFs: 6t78_A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 6t78_C
6t78_D
			
Publications: Dodonova SO, Zhu F, Dienemann C, Taipale J, Cramer P. Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function. Nature 580:669-672 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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