DNA Binding Motif

						

			
Accessions: M0626 (AthalianaCistrome v4_May2016)

			
Names: SND3.ampDAP, T02284;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 22
Consensus: gTwdCTTswtcywyAmGywwch
Weblogo: 
PSSM: P0      A      C      G      T
01    115     83    268    124      g
02    124     33     22    411      T
03    251     13     93    233      w
04    178     76    163    173      d
05      8    577      1      4      C
06      0      0     96    494      T
07      0      0      0    590      T
08     69    263    219     39      s
09    163     86     27    314      w
10    122    140     99    229      t
11    133    233    105    119      c
12    143    188     74    185      y
13    233     39     69    249      w
14      2    377     57    154      y
15    590      0      0      0      A
16    281    309      0      0      m
17     11      0    536     43      G
18     80    239     64    207      y
19    215     94     25    256      w
20    380     12      7    191      w
21     76    332     61    121      c
22    154    217     56    163      h
Binding TFs: T02284 (No apical meristem (NAM) protein)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.