DNA Binding Motif

						

			
Accessions: MA1231.2 (JASPAR 2024)

			
Names: ERF15
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 14
Consensus: yytymGCCGCCdyy
Weblogo: 
PSSM: P0      A      C      G      T
01    404    837    296    596      y
02    487    841    178    627      y
03    442    248    375   1068      t
04    206    731    280    916      y
05   1010    942     94     87      m
06     30      7   2078     18      G
07      3   2124      1      5      C
08     59   2062      3      9      C
09     51      3   2067     12      G
10     14   2066     14     39      C
11     10   2107      8      8      C
12    579     62    911    581      d
13    214    929    236    754      y
14    509    695    348    581      y
Type: Heterodimer
Binding TFs: Q8VYM0 (AP2 domain)
Q8VYM0
Binding Sites: MA1231.2.1
MA1231.2.10
MA1231.2.11
MA1231.2.12
MA1231.2.13
MA1231.2.14
MA1231.2.15
MA1231.2.16
MA1231.2.17
MA1231.2.18
MA1231.2.19
MA1231.2.2
MA1231.2.20
MA1231.2.3
MA1231.2.4
MA1231.2.5
MA1231.2.6
MA1231.2.7
MA1231.2.8
MA1231.2.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.