DNA Binding Motif

						

			
Accessions: 1kb2_B (3D-footprint 20231221)

			
Names: Vitamin D3 Receptor
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element
Length: 5
Consensus: GTTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      7      7     73      9      G
02      0      0      0     96      T
03      9      7      7     73      T
04      7     73      9      7      C
05     73      9      7      7      A
Binding TFs: 1kb2_B (Zinc finger, C4 type (two domains))
Binding Sites: 1kb2_C
1kb2_D
			
Publications: Shaffer P.L, Gewirth D.T. Structural basis of VDR-DNA interactions on direct repeat response elements. The EMBO journal 21:2242-52 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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