DNA Binding Motif

						

			
Accessions: SOX3_methyl_1 (HT-SELEX2 May2017)

			
Names: SOX3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: mkaACAATrs
Weblogo: 
PSSM: P0      A      C      G      T
01   1064    881    609    851      m
02   1795   1633   3405   2610      k
03   3405   1170   1017    763      a
04   3405     54      0    129      A
05      0   3405      0      0      C
06   3405     41     12      0      A
07   3405     46     17     57      A
08     61     13      0   3405      T
09   2170     52   3405    205      r
10    585    977   1501    342      s
Binding TFs: SOX3 (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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