DNA Binding Motif

						

			
Accessions: RORB_3 (HT-SELEX2 May2017)

			
Names: RORB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: dAwgTrGGTyAGTrGGTCAs
Weblogo: 
PSSM: P0      A      C      G      T
01   5513   2342   5376   6297      d
02  17918    955    849   2457      A
03  11093    245    735   8193      w
04   2480   4738   8442   3868      g
05    578   1453   3785  17143      T
06  12139    179   7301     20      r
07      0     19  19341    482      G
08     48     32  19489     52      G
09     46    509   1770  18270      T
10    271  15376     16   8662      y
11  19499      1     49    155      A
12   1687   3342  13487   1012      G
13    239    864   1498  18618      T
14  12889    192   6557     50      r
15     54     54  19285    766      G
16    132     87  19489    100      G
17    675    966   1833  18525      T
18     72  19241    177    700      C
19  18901     42   1959    151      A
20   4204   5860   5069   4395      s
Binding TFs: RORB (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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