DNA Binding Motif
| Accessions: | UP00068A_1 (UniPROBE 20160601) |
| Names: | C77258, Eomes, Eomesodermin homolog (Xenopus laevis), Tbr2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | krwarGGTGTGAAawyy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.19 0.22 0.30 0.30 k 02 0.30 0.23 0.27 0.20 r 03 0.32 0.21 0.18 0.29 w 04 0.48 0.10 0.25 0.18 a 05 0.65 0.01 0.26 0.07 r 06 0.10 0.02 0.84 0.04 G 07 0 0.01 0.98 0.01 G 08 0 0.08 0 0.91 T 09 0.01 0 0.99 0 G 10 0.04 0.10 0 0.86 T 11 0.01 0.04 0.84 0.11 G 12 0.98 0 0.01 0 A 13 0.79 0.10 0.03 0.08 A 14 0.65 0.14 0.09 0.12 a 15 0.42 0.21 0.07 0.30 w 16 0.21 0.29 0.13 0.36 y 17 0.20 0.27 0.18 0.35 y |
| Binding TFs: | UP00068A (T-box) |
| Binding Sites: | AAGTGTGA AGGTGAGA AGGTGCGA AGGTGTCA AGGTGTCG AGGTGTGA AGGTGTTA AGTGTGAA ATCACACC ATGTGTGA CTTCACAC GGGTGTGA GGTGCGAA GGTGTGAC GGTGTTAA GGTGTTAC GTGTGAAA GTGTGAAC TCACACCA ATTCACAC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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