DNA Binding Motif

						

			
Accessions: FOXJ2_HOXB13_2 (HumanTF2 1.0)

			
Names: FOXJ2_HOXB13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: rtmaAcaymrTaAaa
Weblogo: 
PSSM: P0      A      C      G      T
01    101     52    111     22      r
02    120     99     53    213      t
03    213    100      8     24      m
04    213     87      7     45      a
05    213     12     40     29      A
06     28    213     18     60      c
07    213     63     47     12      a
08     39     92     22    120      y
09     65     91     14     42      m
10    118     18     95     56      r
11     31     41     12    213      T
12    213     20     39     89      a
13    213     20      7     37      A
14    213     35     19     51      a
15     94     46     36     37      a
Type: Heterodimer
Binding TFs: HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
FOXJ2_TF1 (Fork head domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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