DNA Binding Motif

						

			
Accessions: XPA_2 (HT-SELEX2 May2017)

			
Names: XPA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 11
Consensus: ccACCTCACac
Weblogo: 
PSSM: P0      A      C      G      T
01    176    345    186     93      c
02    119    800    146    131      c
03    800    205     93     46      A
04      5    800      0      0      C
05     40    800     43     16      C
06    135     66    166    800      T
07      3    800      0     45      C
08    800    116     79     75      A
09      0    800      0      0      C
10    800    330    174     91      a
11    102    436     81    181      c
Binding TFs: XPA (XPA protein N-terminal, XPA protein C-terminus)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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