DNA Binding Motif

						

			
Accessions: RXRB_methyl_1 (HT-SELEX2 May2017)

			
Names: RXRB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 15
Consensus: rrGGTCAAAGGTCrh
Weblogo: 
PSSM: P0      A      C      G      T
01    785    197   1755    184      r
02   1262     34   1661     10      r
03     44      5   2923     36      G
04     30      0   2923    427      G
05     13     29    206   2923      T
06     37   2923    559    454      C
07   2923      0    231      1      A
08   2923     22    320    129      A
09   2923      0    512      1      A
10     13      3   2923     13      G
11     11      2   2923    270      G
12      3     14    159   2923      T
13     60   2923    315    481      C
14   2923      9   1521     16      r
15    821    764    505    832      h
Binding TFs: RXRB (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.