DNA Binding Motif

						

			
Accessions: EEAD0042 (EEADannot 2023-12-22)

			
Names: ARF39_DYAD11
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 22
Consensus: wTGTybsyywwwrrsvrACAwr
Weblogo: 
PSSM: P0      A      C      G      T
01    306    206    172    278      w
02     15     32     53    862      T
03      0      0    962      0      G
04      0      0      0    962      T
05     35    620     61    246      y
06     61    245    355    301      b
07     85    368    365    144      s
08    202    334    182    244      y
09    214    260    176    312      y
10    286    215    205    256      w
11    293    188    188    293      w
12    256    205    215    286      w
13    312    176    260    214      r
14    244    182    334    202      r
15    144    365    368     85      s
16    301    355    245     61      v
17    246     61    620     35      r
18    962      0      0      0      A
19      0    962      0      0      C
20    862     53     32     15      A
21    278    172    206    306      w
22    166    139    221    128      r
Binding TFs: AuxinResponseFactor39 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.