DNA Binding Motif

Accessions: 4xic_A (3D-footprint 20231221)
Names: Homeotic protein antennapedia
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: ANTPHD WITH 15BP di-thioate modified DNA DUPLEX
Length: 6
Consensus: CTAAtg
01 0 96 0 0 C
02 0 0 0 96 T
03 96 0 0 0 A
04 96 0 0 0 A
05 13 16 13 54 t
06 16 13 54 13 g
Binding TFs: 4xic_A (Homeobox domain)
Binding Sites: 4xic_C
Publications: Zandarashvili L, Nguyen D, Anderson KM, White MA, Gorenstein DG, Iwahara J. Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys J 109:1026-37 (2015). [Pubmed]

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