DNA Binding Motif

						

			
Accessions: IRX3_methyl_1 (HT-SELEX2 May2017)

			
Names: IRX3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 18
Consensus: wACryrwwwwwwykCGTw
Weblogo: 
PSSM: P0      A      C      G      T
01   1793     94   1108   3279      w
02   6274     69    304    152      A
03     13   6274     37    186      C
04   2867     67   6274     63      r
05   1116   2028     51   4246      y
06   2225    794   4049    682      r
07   2303   1317    689   1965      w
08   1777   1077   1207   2213      w
09   2253    506    826   2689      w
10   2438    698    525   2613      w
11   2343   1215    849   1867      w
12   2369    501   1290   2114      w
13    351   4363    381   1911      y
14   1268     83   6274   2891      k
15     83   6274     36   1347      C
16    142     38   6274     55      G
17    150    239     81   6274      T
18   3054   1000     87   2132      w
Binding TFs: IRX3 (Homeobox domain, Homeobox KN domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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