DNA Binding Motif

						

			
Accessions: RARA_4 (HT-SELEX2 May2017)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: rrGGtCAarrGGtCAs
Weblogo: 
PSSM: P0      A      C      G      T
01    280    159    374    146      r
02    555    191    402     68      r
03     42     26    958    124      G
04     10     12    958    174      G
05     90    113    367    958      t
06     52    958    161    116      C
07    958      5    298     10      A
08    322    231    183    222      a
09    281    143    397    136      r
10    484    165    474     39      r
11     19     15    958     80      G
12      3      2    958    190      G
13    114    113    350    958      t
14     27    958    199    131      C
15    958     10    241     14      A
16    192    321    256    189      s
Binding TFs: RARA (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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