DNA Binding Motif
| Accessions: | UP00518A_2 (UniPROBE 20160601) |
| Names: | A.nid Fox4, ANID_04521, fhpA |
| Organisms: | Emericella nidulans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | grsmyawGTTTTACAcgwkmgw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.20 0.35 0.23 g 02 0.37 0.14 0.28 0.20 r 03 0.12 0.40 0.34 0.15 s 04 0.44 0.26 0.17 0.14 m 05 0.09 0.26 0.08 0.57 y 06 0.55 0.15 0.20 0.10 a 07 0.30 0.11 0.05 0.54 w 08 0.01 0 0.99 0 G 09 0.01 0.01 0 0.97 T 10 0 0 0 0.99 T 11 0.18 0 0.01 0.81 T 12 0 0 0.03 0.97 T 13 0.98 0 0.01 0 A 14 0 0.99 0 0.01 C 15 0.76 0.12 0.05 0.07 A 16 0.21 0.42 0.13 0.25 c 17 0.16 0.14 0.62 0.08 g 18 0.35 0.18 0.21 0.27 w 19 0.11 0.20 0.39 0.29 k 20 0.25 0.50 0.07 0.18 m 21 0.18 0.20 0.42 0.20 g 22 0.30 0.13 0.16 0.41 w |
| Binding TFs: | UP00518A (Fork head domain) |
| Binding Sites: | AACAAACA ACAAACAA ATTGTTTG CAAACAAA GCAAACAA AAGCAAAC AAGTTTGC ACAAACAC ACAAACAT AGCAAACA AGGCAAAC ATCAAACA ATGTTTGC CAAACATC CGCAAACA GACAAACA GCAAACAC GGCAAACA GTCAAACA GTTTGCTA |
| Publications: | Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed] |
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