DNA Binding Motif

						

			
Accessions: MA0909.3 (JASPAR 2024)

			
Names: Hoxd13
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 10
Consensus: asCAATAAAa
Weblogo: 
PSSM: P0      A      C      G      T
01   1756   1323   1457   1441      a
02   1372   1778   1716   1111      s
03     16   5866     34     61      C
04   5775      5    148     49      A
05   5923     13     11     30      A
06      0      2      3   5972      T
07   5955      4      7     11      A
08   5923     37      2     15      A
09   4227    704    379    667      A
10   2477   1105   1107   1288      a
Type: Heterodimer
Binding TFs: P70217 (Homeobox domain, Hox protein A13 N terminal)
P70217
Binding Sites: MA0909.3.1
MA0909.3.10
MA0909.3.11 / MA0909.3.3 / MA0909.3.5
MA0909.3.12 / MA0909.3.16 / MA0909.3.18
MA0909.3.13
MA0909.3.14
MA0909.3.15 / MA0909.3.7
MA0909.3.17
MA0909.3.19
MA0909.3.2
MA0909.3.20 / MA0909.3.4
MA0909.3.6 / MA0909.3.8
MA0909.3.9
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.