DNA Binding Motif

						

			
Accessions: OsCBT (Athamap 20091028)

			
Names: OsCBT
Organisms: Oryza sativa
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]
Length: 15
Consensus: tmCGyGTkkkkTkCG
Weblogo: 
PSSM: P0      A      C      G      T
01     14      9     10     45      t
02     28     26     19      6      m
03      0     79      0      0      C
04      0      0     79      0      G
05      0     53      0     26      y
06      0      0     79      0      G
07      0      1      3     75      T
08      9      4     21     45      k
09      7      8     24     40      k
10     10      9     24     36      k
11      7      8     32     32      k
12      0      4      0     75      T
13     11      4     35     29      k
14      0     76      0      3      C
15      1      0     76      2      G
Binding TFs: OsCBT (Ankyrin repeat, IQ calmodulin-binding motif, CG-1 domain, Ankyrin repeats (3 copies), Ankyrin repeat, Ankyrin repeats (many copies))
			
Publications: Choi MS, Kim MC, Yoo JH, Moon BC, Koo SC, Park BO, Lee JH, Koo YD, Han HJ, Lee SY, Chung WS, Lim CO, Cho MJ. 2005. Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.). J Biol Chem 280: 40820-31.  [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.