DNA Binding Motif

						

			
Accessions: MA0873.2 (JASPAR 2024)

			
Names: HOXD12
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 10
Consensus: rgTCGTAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01    629    155    525     58      r
02    485    387   1367     12      g
03      1     49      8   1367      T
04      3   1367      5      0      C
05    207      2   1367      0      G
06      1     10      0   1367      T
07   1367      0      2    222      A
08   1367      0      3      0      A
09   1367      0      6     44      A
10   1367    185     48    317      A
Type: Heterodimer
Binding TFs: P35452 (Homeobox domain)
P35452
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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