DNA Binding Motif

Accessions: 1r0o_AB (3D-footprint 20231221)
Names: Ultraspiracle protein
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex
Length: 10
Consensus: GTCAnTGACC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 0 96 T
03 0 96 0 0 C
04 67 9 9 11 A
05 24 24 24 24 n
06 9 9 11 67 T
07 0 0 96 0 G
08 67 11 9 9 A
09 0 96 0 0 C
10 0 96 0 0 C
Type: Heterodimer
Binding TFs: 1r0o_A (Zinc finger, C4 type (two domains))
1r0o_B (Zinc finger, C4 type (two domains))
Binding Sites: 1r0o_C
1r0o_D
Publications: Devarakonda S, Harp J.M, Kim Y, Ozyhar A, Rastinejad F. Structure of the heterodimeric ecdysone receptor DNA-binding complex. The EMBO journal 22:5827-40 (2003). [Pubmed]

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