DNA Binding Motif

						

			
Accessions: MA2022.1 (JASPAR 2024)

			
Names: LOB
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 17
Consensus: CCGCCGCCGCmgcygcc
Weblogo: 
PSSM: P0      A      C      G      T
01     65    553     74    103      C
02    116    569     24     86      C
03     92     18    552    133      G
04      7    760     10     18      C
05     28    739      4     24      C
06     39      4    729     23      G
07      4    768      7     16      C
08     39    721      8     27      C
09     37      1    733     24      G
10     14    693     38     50      C
11    250    398     44    103      m
12    129     33    532    101      g
13     73    538     71    113      c
14    147    331     56    261      y
15    170     74    373    178      g
16     96    463     96    140      c
17    159    382     87    167      c
Type: Heterodimer
Binding TFs: Q9FML4 (Protein of unknown function DUF260)
Q9FML4
Binding Sites: MA2022.1.1
MA2022.1.10
MA2022.1.11
MA2022.1.12
MA2022.1.13
MA2022.1.14
MA2022.1.15
MA2022.1.16
MA2022.1.17
MA2022.1.18
MA2022.1.19
MA2022.1.2
MA2022.1.20
MA2022.1.3
MA2022.1.4
MA2022.1.5
MA2022.1.6
MA2022.1.7
MA2022.1.8
MA2022.1.9
			
Publications: Husbands A, Bell EM, Shuai B, Smith HM, Springer PS. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Nucleic Acids Res : (2007;35(19):6663-71.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.