DNA Binding Motif

						

			
Accessions: MA2430.1 (JASPAR 2024)

			
Names: SPL14B
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: gCGGTAsTACCGc
Weblogo: 
PSSM: P0      A      C      G      T
01  17646  16294  76089   9257      g
02   8365  86511   6756  17654      C
03  10211   3627  95865   9583      G
04   3375   2655 103951   9305      G
05   2838   5466   1995 108987      T
06 109654   1732   2504   5396      A
07   1589  39794  76816   1087      s
08   3747   2416   1304 111819      T
09 111395    894   4169   2828      A
10   1103 112646   2986   2551      C
11   4331 101810   4118   9027      C
12   8642   2622 104614   3408      G
13   6729  75413  19889  17255      c
Binding Sites: MA2430.1.11 / MA2430.1.12 / MA2430.1.4 / MA2430.1.6 / MA2430.1.7 / MA2430.1.8
MA2430.1.1
MA2430.1.10
MA2430.1.13
MA2430.1.14
MA2430.1.15
MA2430.1.16
MA2430.1.17
MA2430.1.18
MA2430.1.19
MA2430.1.2
MA2430.1.20
MA2430.1.3
MA2430.1.5
MA2430.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.