DNA Binding Motif

						

			
Accessions: 4xlp_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor SigA
Organisms: Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of T.aquaticus transcription initiation complex containing upstream fork promoter
Length: 25
Consensus: CTTGAcannnnnnnnnnnnTnTGCT
Weblogo: 
PSSM: P0      A      C      G      T
01      8     72      8      8      C
02      0      0      0     96      T
03      0      0      0     96      T
04      0      0     96      0      G
05     96      0      0      0      A
06     16     56      8     16      c
07     48     16     16     16      a
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15     24     24     24     24      n
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19     24     24     24     24      n
20      0      0      0     96      T
21     24     24     24     24      n
22      0      0      0     96      T
23      0      0     96      0      G
24      0     96      0      0      C
25      0      0      0     96      T
Binding TFs: 4xlp_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4)
Binding Sites: 4xlp_O
4xlp_P
			
Publications: Bae B, Feklistov A, Lass-Napiorkowska A, Landick R, Darst SA. Structure of a bacterial RNA polymerase holoenzyme open promoter complex. Elife : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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