DNA Binding Motif

						

			
Accessions: EEAD0089 (EEADannot 2023-12-22)

			
Names: MYB13
Organisms: Vitis vinifera
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 14
Consensus: yyyCACCwACCmhh
Weblogo: 
PSSM: P0      A      C      G      T
01  0.197  0.306  0.162  0.335      y
02  0.082  0.465  0.143  0.310      y
03  0.094  0.522  0.042  0.342      y
04  0.010  0.813  0.000  0.177      C
05  0.997  0.000  0.003  0.000      A
06  0.131  0.867  0.002  0.000      C
07  0.000  1.000  0.000  0.000      C
08  0.394  0.056  0.000  0.551      w
09  0.988  0.003  0.000  0.008      A
10  0.108  0.886  0.000  0.007      C
11  0.002  0.822  0.000  0.177      C
12  0.375  0.342  0.079  0.204      m
13  0.301  0.310  0.049  0.340      h
14  0.305  0.306  0.111  0.278      h
Binding TFs: VvMYB13 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
			
Publications: Orduna L, Li M, Navarro-Paya D, Zhang C, Santiago A, Romero P, Ramsak Z, Magon G, Holl J, Merz P, Gruden K, Vannozzi A, Cantu D, Bogs J, Wong DCJ, Huang SC, Matus JT. Direct regulation of shikimate, early phenylpropanoid, and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. Plant J 110:529-547 (2022). [Pubmed]


Wong DCJ, Schlechter R, Vannozzi A, Holl J, Hmmam I, Bogs J, Tornielli GB, Castellarin SD, Matus JT. A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation. DNA Res 23:451-466 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.