DNA Binding Motif

						

			
Accessions: HOXD12_ELK1_2 (HumanTF2 1.0)

			
Names: HOXD12_ELK1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: rsCGGAAGTmrTAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01    501    259    490    120      r
02    335    576    415    197      s
03    143    991      5      0      C
04      0      2    991      5      G
05     17      0    991      8      G
06    991      4      0      6      A
07    991      0      0     64      A
08      9      9    991      0      G
09      4    286      0    991      T
10    991    673    107      6      m
11    991     15    514      9      r
12      0      3      0    991      T
13    991      2      5    287      A
14    991      5      0      1      A
15    991     12      6      4      A
16    804    107     16     64      A
Type: Heterodimer
Binding TFs: ELK1_TF2 (Ets-domain)
ELK1_Full (Ets-domain)
HOXD12_TF1 (Homeobox domain)
ELK1_TF1 (Ets-domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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