DNA Binding Motif
| Accessions: | MA0142.1 (JASPAR 2024) |
| Names: | Pou5f1::Sox2 |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 15 |
| Consensus: | ywTTswyATGCAaAt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 63 846 66 389 y 02 579 58 28 701 w 03 11 50 36 1270 T 04 47 12 79 1231 T 05 118 363 825 63 s 06 415 18 29 907 w 07 206 365 186 612 y 08 1235 30 24 80 A 09 17 5 15 1332 T 10 10 16 1239 104 G 11 14 1029 129 196 C 12 1050 16 30 269 A 13 887 68 315 92 a 14 1200 33 75 53 A 15 198 119 207 837 t |
| Type: | Heterodimer |
| Binding TFs: | P48432 (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor) P48432 |
| Binding Sites: | MA0142.1.1 MA0142.1.10 MA0142.1.11 MA0142.1.12 MA0142.1.13 MA0142.1.14 MA0142.1.15 MA0142.1.16 MA0142.1.17 MA0142.1.18 MA0142.1.19 MA0142.1.2 MA0142.1.20 MA0142.1.3 MA0142.1.4 MA0142.1.5 MA0142.1.6 MA0142.1.7 MA0142.1.8 MA0142.1.9 |
| Publications: | Chen X, Xu H, Yuan P, Fang F, Huss M, Vega V.B, Wong E, Orlov Y.L, Zhang W, Jiang J, Loh Y.H, Yeo H.C, Yeo Z.X, Narang V, Govindarajan K.R, Leong B, Shahab A, Ruan Y, Bourque G, Sung W.K, Clarke N.D, Wei C.L, Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-17 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.