DNA Binding Motif

						

			
Accessions: HOXB13_TBX3_1 (HumanTF2 1.0)

			
Names: HOXB13_TBX3
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: cycrTAAwTcaCACst
Weblogo: 
PSSM: P0      A      C      G      T
01     33    141     48     27      c
02     16     86     22    125      y
03     53    131     15     50      c
04    149      0    100     28      r
05      0      6     10    249      T
06    249      1     17     59      A
07    249      5      1      0      A
08    249     33      2    106      w
09     32     35     11    249      T
10     66    249     78     24      c
11    249      0     82     72      a
12      0    249      7      5      C
13    249      0     55     11      A
14      9    249      3      0      C
15     13    125     66     44      s
16     49     42     17    141      t
Type: Heterodimer
Binding TFs: HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
TBX3_TF2 (T-box)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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