DNA Binding Motif
| Accessions: | 4ihs_B (3D-footprint 20231221) |
| Names: | HTH-type transcriptional regulator BenM |
| Organisms: | Acinetobacter baylyi, strain ATCC 33305 / BD413 / ADP1 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal Structure of BenM_DBD/catB site 1 DNA Complex |
| Length: | 9 |
| Consensus: | GGTATATAA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7 5 79 5 G 02 0 0 96 0 G 03 0 0 0 96 T 04 73 7 11 5 A 05 0 0 0 96 T 06 79 5 7 5 A 07 5 5 11 75 T 08 96 0 0 0 A 09 81 5 5 5 A |
| Binding TFs: | 4ihs_B (Bacterial regulatory helix-turn-helix protein, lysR family) |
| Binding Sites: | 4ihs_E 4ihs_F |
| Publications: | Alanazi AM, Neidle EL, Momany C. The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. Acta Crystallogr D Biol Crystallogr : (2013). [Pubmed] |
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