DNA Binding Motif

						

			
Accessions: EEAD0030 (EEADannot 2025-01-07)

			
Names: ARF18_DYAD6
Organisms: Zea mays
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 18
Consensus: cmgACAarammmgACAwa
Weblogo: 
PSSM: P0      A      C      G      T
01     63    139     56     45      c
02    378    339    170     75      m
03    229     73    603     57      g
04    962      0      0      0      A
05      0    962      0      0      C
06    849     67     34     12      A
07    289    212    235    226      a
08    274    233    281    174      r
09    384    195    185    198      a
10    365    259    163    175      m
11    241    360    134    227      m
12    401    326    144     91      m
13    236     74    600     52      g
14    962      0      0      0      A
15      0    962      0      0      C
16    878     50     21     13      A
17    343    169    199    251      w
18    243    140    159    117      a
Binding TFs: AuxinResponseFactor18 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.