DNA Binding Motif
| Accessions: | UP00286A_1 (UniPROBE 20160601) |
| Names: | Chromatin structure remodeling complex protein RSC3, D9740.13, Remodel the structure of chromatin complex subunit 3, Rsc3, YDR303C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | yawmakavCGCGCGCkmtktg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.34 0.03 0.41 y 02 0.50 0.17 0.11 0.21 a 03 0.34 0.03 0.12 0.51 w 04 0.46 0.36 0.05 0.12 m 05 0.44 0.24 0.15 0.17 a 06 0.15 0.18 0.35 0.31 k 07 0.62 0.13 0.15 0.09 a 08 0.25 0.27 0.39 0.09 v 09 0.04 0.80 0.09 0.07 C 10 0.04 0.05 0.89 0.03 G 11 0 0.99 0.01 0 C 12 0 0.02 0.98 0 G 13 0.01 0.98 0 0.01 C 14 0.01 0.01 0.98 0 G 15 0.08 0.74 0.11 0.07 C 16 0.04 0.19 0.28 0.48 k 17 0.34 0.36 0.16 0.14 m 18 0.23 0.22 0.14 0.40 t 19 0.21 0.13 0.34 0.33 k 20 0.09 0.06 0.21 0.65 t 21 0.14 0.23 0.43 0.20 g |
| Binding TFs: | UP00286A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AACGCGCG ACGACGCG ACGCGCGC AGCGCGCG ATCGCGCG CCCGCGCG CCGCGCGC CCGCGCGG CGCGCGCA CGCGCGCC CGCGCGCG CGCGCGGA CGCGCGGC CGCGCGTA CGCGCGTC CGGCGCGC GCGCGCGA GCGCGCGC GCGCGCTA TCGCGCGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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