DNA Binding Motif
| Accessions: | MA2445.1 (JASPAR 2024) |
| Names: | SPL4D |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | ggTAsTACCGCt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 24685 13599 71924 18009 g 02 7687 20590 84708 15232 g 03 4092 5051 2816 116258 T 04 121860 1908 1714 2735 A 05 871 84731 41733 882 s 06 4118 2991 1271 119837 T 07 113260 2800 5014 7143 A 08 982 122418 2041 2776 C 09 2703 107304 3307 14903 C 10 13646 2731 105892 5948 G 11 3161 106976 10624 7456 C 12 11641 14676 15146 86754 t |
| Binding Sites: | MA2445.1.1 MA2445.1.10 / MA2445.1.11 / MA2445.1.12 / MA2445.1.13 / MA2445.1.7 / MA2445.1.8 MA2445.1.14 MA2445.1.15 MA2445.1.16 MA2445.1.17 MA2445.1.18 MA2445.1.19 MA2445.1.2 MA2445.1.20 MA2445.1.3 / MA2445.1.4 MA2445.1.5 MA2445.1.6 MA2445.1.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.