DNA Binding Motif
| Accessions: | MA1691.2 (JASPAR 2024) |
| Names: | ARF27 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 8 |
| Consensus: | GCAGACAT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 700 671 4962 497 G 02 173 6134 279 244 C 03 5932 635 115 148 A 04 163 93 6412 162 G 05 6497 133 160 40 A 06 92 6539 89 110 C 07 6652 76 55 47 A 08 782 467 596 4985 T |
| Type: | Heterodimer |
| Binding TFs: | D9HNV4 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV4 |
| Binding Sites: | MA1691.2.1 / MA1691.2.14 / MA1691.2.4 / MA1691.2.5 MA1691.2.10 / MA1691.2.11 / MA1691.2.13 / MA1691.2.16 / MA1691.2.18 / MA1691.2.2 / MA1691.2.20 MA1691.2.12 MA1691.2.15 / MA1691.2.3 MA1691.2.17 / MA1691.2.19 MA1691.2.6 MA1691.2.7 MA1691.2.8 MA1691.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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