DNA Binding Motif

						

			
Accessions: RARA_5 (HT-SELEX2 May2017)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 14
Consensus: rrGGtCrTGaCCty
Weblogo: 
PSSM: P0      A      C      G      T
01    146     82    189     93      r
02    323    120    187     36      r
03     18     47    510     82      G
04     11     19    510    136      G
05    136    161    228    510      t
06     14    510     52     30      C
07    267      0    243     11      r
08     12     14      1    510      T
09     26     10    510      4      G
10    510    135     66     89      a
11     84    510      0     10      C
12     35    510     28     23      C
13     27    138    114    372      t
14     88    166     79    177      y
Binding TFs: RARA (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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