DNA Binding Motif

						

			
Accessions: MA1237.1 (JASPAR 2024), M0015 (AthalianaCistrome v4_May2016)

			
Names: AT4G16750, At4g16750.DAP, T19925;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: cdycdyCrCCGaCrm
Weblogo: 
PSSM: P0      A      C      G      T
01    122    277     72    129      c
02    186     97    166    151      d
03    113    226     91    170      y
04    102    326     41    131      c
05    161     63    192    184      d
06     66    301     47    186      y
07     30    494     20     56      C
08    366      0    227      7      r
09      0    593      4      3      C
10      0    600      0      0      C
11     10      0    590      0      G
12    405    110      1     84      a
13      0    599      0      1      C
14    385     14    160     41      r
15    177    210     79    134      m
Type: Heterodimer
Binding TFs: Q9SUK8 / T19925 (AP2 domain)
Q9SUK8
Binding Sites: MA1237.1.1
MA1237.1.10
MA1237.1.11
MA1237.1.12
MA1237.1.13
MA1237.1.14
MA1237.1.15
MA1237.1.16
MA1237.1.17
MA1237.1.18
MA1237.1.19
MA1237.1.2
MA1237.1.20
MA1237.1.3
MA1237.1.4
MA1237.1.5
MA1237.1.6
MA1237.1.7
MA1237.1.8
MA1237.1.9
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.