DNA Binding Motif

						

			
Accessions: 4kdp_AB (3D-footprint 20231221)

			
Names: TcaR transcription regulator
Organisms: Staphylococcus epidermidis, strain ATCC 12228 / FDA PCI 1200
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins
Length: 11
Consensus: CGCAGcGnnnA
Weblogo: 
PSSM: P0      A      C      G      T
01      4     81      4      7      C
02      0      0     96      0      G
03      9     67     11      9      C
04     96      0      0      0      A
05      9     11     67      9      G
06     19     38     19     20      c
07      0      0     96      0      G
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     88      4      2      2      A
Binding TFs: 4kdp_A / 4kdp_B (Bacterial regulatory protein, arsR family, MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 4kdp_H
			
Publications: Chang Y.M, Ho C.H, Chen C.K, Maestre-Reyna M, Chang-Chien M.W, Wang A.H. TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins. Nucleic acids research 42:5314-21 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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