DNA Binding Motif

						

			
Accessions: 5e3o_B (3D-footprint 20231221)

			
Names: DNA-binding protein Fis
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27bp DNA F32 (AAATTTGGAGGAATTTTCTCCAAATTT)
Length: 6
Consensus: CCnCCA
Weblogo: 
PSSM: P0      A      C      G      T
01     11     67      9      9      C
02     11     67      9      9      C
03     24     24     24     24      n
04      9     67     11      9      C
05      0     96      0      0      C
06     96      0      0      0      A
Binding TFs: 5e3o_B (Bacterial regulatory protein, Fis family)
Binding Sites: 5e3o_C
5e3o_D
			
Publications: Hancock SP, Stella S, Cascio D, Johnson RC. DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. PLoS One : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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