DNA Binding Motif

						

			
Accessions: ZNF23_2 (HT-SELEX2 May2017), UN0167.1 (JASPAR 2024)

			
Names: ZNF23
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 19
Consensus: kkGkCGCGGCCATGGGyGh
Weblogo: 
PSSM: P0      A      C      G      T
01     67     92    162    158      k
02     35     45    300    145      k
03     41     49    412     21      G
04     93      7    158    261      k
05      9    472     46     21      C
06     11      3    479      5      G
07      7    435     98     61      C
08      2      0    478      0      G
09      7      1    482      4      G
10     71    342     66      2      C
11     41    469     69      0      C
12    480      0     30      5      A
13      0     22     31    472      T
14      0      0    472     18      G
15      7      0    478      3      G
16     56      7    338     95      G
17     62    122     50    245      y
18      9      8    472      4      G
19    167    129     30    154      h
Type: Heterodimer
Binding TFs: ZNF23 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
P17027 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
P17027
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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