DNA Binding Motif

						

			
Accessions: HOXB13_ETV1 (HumanTF2 1.0)

			
Names: HOXB13_ETV1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: rCCGGAAgTawwaAAa
Weblogo: 
PSSM: P0      A      C      G      T
01     95      9     85     23      r
02      9    133     47      4      C
03     43    180      8      2      C
04      3      0    180      0      G
05      0      0    180     14      G
06    180      0      0      7      A
07    180     23      0     35      A
08     39     39    141      0      g
09      0     42      0    138      T
10    105     17     42     14      a
11     85      4     27     64      w
12    109     12      7    180      w
13    180     10     20     57      a
14    180      3      0      5      A
15    180     11      2     57      A
16     88     21     33     37      a
Type: Heterodimer
Binding TFs: ETV1_TF2 (Ets-domain)
HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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