DNA Binding Motif

						

			
Accessions: MA1338.1 (JASPAR 2024), M0203 (AthalianaCistrome v4_May2016)

			
Names: AREB3, DPBF3, AREB3.DAP, T14170;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wwwggwsACGTGKCA
Weblogo: 
PSSM: P0      A      C      G      T
01    246     43    149    160      w
02    225     52    142    179      w
03    200     40     98    260      w
04     77     35    351    135      g
05    142     74    358     24      g
06    259     93      0    246      w
07      1    349    236     12      s
08    598      0      0      0      A
09      0    598      0      0      C
10      0      0    598      0      G
11      0      0      0    598      T
12      0      0    598      0      G
13      0      0    422    176      K
14     14    584      0      0      C
15    460     37     76     25      A
Type: Heterodimer
Binding TFs: Q9LES3 / T14170 (bZIP transcription factor, Basic region leucine zipper)
Q9LES3
Binding Sites: MA1338.1.1
MA1338.1.10
MA1338.1.11
MA1338.1.12
MA1338.1.13
MA1338.1.14
MA1338.1.15
MA1338.1.16
MA1338.1.17
MA1338.1.18 / MA1338.1.20
MA1338.1.19
MA1338.1.2
MA1338.1.3
MA1338.1.4
MA1338.1.5
MA1338.1.6
MA1338.1.7
MA1338.1.8
MA1338.1.9
			
Publications: Choi H., Hong J., Ha J., Kang J., Kim S. Y. ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem. 275:1723-1730 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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