DNA Binding Motif
| Accessions: | MA1047.2 (JASPAR 2024) |
| Names: | TGA5 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | wwgaTGACGTCAycw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1135 511 554 912 w 02 818 560 537 1197 w 03 648 382 1574 508 g 04 1934 540 474 164 a 05 19 57 10 3026 T 06 41 26 2769 276 G 07 3036 11 23 42 A 08 4 2802 22 284 C 09 288 16 2804 4 G 10 28 23 16 3045 T 11 273 2650 140 49 C 12 2907 9 147 49 A 13 206 973 612 1321 y 14 669 1257 443 743 c 15 1121 530 603 858 w |
| Type: | Heterodimer |
| Binding TFs: | Q39163 (bZIP transcription factor, Basic region leucine zipper, Seed dormancy control) Q39163 |
| Binding Sites: | MA1047.2.1 MA1047.2.10 MA1047.2.11 / MA1047.2.7 MA1047.2.12 MA1047.2.13 / MA1047.2.8 MA1047.2.14 MA1047.2.15 MA1047.2.16 MA1047.2.17 MA1047.2.18 / MA1047.2.9 MA1047.2.19 MA1047.2.1 / MA1047.2.2 MA1047.2.10 / MA1047.2.20 MA1047.2.3 MA1047.2.2 / MA1047.2.4 MA1047.2.3 / MA1047.2.5 MA1047.2.4 / MA1047.2.6 MA1047.2.5 / MA1047.2.7 MA1047.2.6 / MA1047.2.8 MA1047.2.9 MA1047.2.11 MA1047.2.12 MA1047.2.13 MA1047.2.14 MA1047.2.15 MA1047.2.16 MA1047.2.17 MA1047.2.18 MA1047.2.19 MA1047.2.20 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.