DNA Binding Motif

						

			
Accessions: GMEB1_2 (HT-SELEX2 May2017)

			
Names: GMEB1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: kTACGTAmwkTACGTAm
Weblogo: 
PSSM: P0      A      C      G      T
01    115    517   2509   5749      k
02    562    578   1866   7025      T
03   8890     22   1078     98      A
04     14   8890      7    331      C
05     26     10   8890     20      G
06     14   1241     35   8890      T
07   8890   1804    709    375      A
08   5649   2810    252    179      m
09   2571   1861   2001   2457      w
10    185    262   2529   5915      k
11    373    732   1851   8890      T
12   8890     19   1258     18      A
13     20   8890     17     31      C
14    318     11   8890      8      G
15     93   1078     33   8890      T
16   6786   2104    508    566      A
17   5676   2491    612    111      m
Binding TFs: GMEB1 (SAND domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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