DNA Binding Motif

						

			
Accessions: MA2429.1 (JASPAR 2024)

			
Names: SPL13D
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: aGCGGTAsTACCGCt
Weblogo: 
PSSM: P0      A      C      G      T
01  44525  11134  10019   6282      a
02   5871   2809  62708    572      G
03   1630  65003    474   4853      C
04   5781   1907  63206   1066      G
05   1506    449  69627    378      G
06   1154   2669    250  67887      T
07  67827    184    722   3227      A
08    360  30215  41025    360      s
09   2274    477    211  68998      T
10  68615    152   2224    969      A
11    220  69755    591   1394      C
12    905  63760   1846   5449      C
13   5014    970  64571   1405      G
14    734  61667   3267   6292      C
15   6268  10119  11305  44268      t
Binding Sites: MA2429.1.10
MA2429.1.11
MA2429.1.1
MA2429.1.12
MA2429.1.13
MA2429.1.14
MA2429.1.15
MA2429.1.16
MA2429.1.17
MA2429.1.18
MA2429.1.19
MA2429.1.2
MA2429.1.20
MA2429.1.3
MA2429.1.4
MA2429.1.5
MA2429.1.6
MA2429.1.7
MA2429.1.8
MA2429.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.