DNA Binding Motif

						

			
Accessions: NFIX_methyl_1 (HT-SELEX2 May2017)

			
Names: NFIX
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: stTGGCrysgTGCCArs
Weblogo: 
PSSM: P0      A      C      G      T
01   1725   2787   3816   1829      s
02   1930   2246   1684  10157      t
03     87      0   1680  10157      T
04      5      0  10157      6      G
05      0      2  10157      0      G
06   1592  10157      0      9      C
07   4258    954   3521   1425      r
08   2027   3466   2054   2610      y
09   1921   2697   3381   2159      s
10   1837   1426   4725   2170      g
11    604   1754    572  10157      T
12      0      0  10157    442      G
13      0  10157      0      0      C
14      0  10157      0      0      C
15  10157   1244      0     79      A
16   5415    916   4742   1132      r
17   1737   2937   3784   1699      s
Binding TFs: NFIX (CTF/NF-I family transcription modulation region, MH1 domain, Nuclear factor I protein pre-N-terminus)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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