DNA Binding Motif

						

			
Accessions: 4rod_AB (3D-footprint 20231221)

			
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter
Length: 16
Consensus: GAnnCTTATATAnCTG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      5     91      0      G
02     87      4      1      4      A
03     24     24     24     24      n
04     24     24     24     24      n
05      0     96      0      0      C
06      0      0      0     96      T
07      4      1      0     91      T
08     91      0      0      5      A
09      0      0      0     96      T
10     91      0      4      1      A
11      0      0      0     96      T
12     80      4      4      8      A
13     24     24     24     24      n
14     14     66      8      8      C
15      4      4      9     79      T
16      4     14     70      8      G
Binding TFs: 4rod_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 4rod_N
4rod_T
			
Publications: Gouge J, Satia K, Guthertz N, Widya M, Thompson AJ, Cousin P, Dergai O, Hernandez N, Vannini A. Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell 163:1375-87 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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