DNA Binding Motif
| Accessions: | UP00006A_1 (UniPROBE 20160601) |
| Names: | Zic3, zinc finger protein of the cerebellum 3, Zinc finger protein ZIC 3 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | smCCCCCgGGGGggt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.13 0.37 0.25 0.24 s 02 0.31 0.45 0.09 0.15 m 03 0.13 0.72 0.03 0.12 C 04 0.13 0.75 0.05 0.07 C 05 0.12 0.81 0.04 0.04 C 06 0.05 0.82 0.08 0.06 C 07 0.05 0.79 0.14 0.02 C 08 0.06 0.09 0.67 0.19 g 09 0.06 0.08 0.82 0.05 G 10 0.04 0.04 0.81 0.12 G 11 0.07 0.05 0.75 0.13 G 12 0.12 0.03 0.72 0.13 G 13 0.10 0.07 0.64 0.19 g 14 0.07 0.20 0.58 0.15 g 15 0.15 0.24 0.23 0.39 t |
| Binding TFs: | UP00006A (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | ACAGCGGG ACCCCCCA ACCCCCCG ACCCCCTG CAGCGGGG CAGGGGGG CCAGCGGG CCAGGGGG CCCCCCGC CCCCCCGG CCCCCGGG CCCCCTGC CCCCGCGG CCCCGGGG CGGGGGGC GACCCCCC GCCCCCCC GGACCCCC GGCCCCCC GGGGGGTA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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