DNA Binding Motif
| Accessions: | MA0980.2 (JASPAR 2024) |
| Names: | RAP2-10 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | yyrCCGACAaww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 477 694 291 1106 y 02 467 733 280 1088 y 03 1041 48 1374 105 r 04 16 2516 6 30 C 05 9 2544 9 6 C 06 16 6 2534 12 G 07 2503 19 10 36 A 08 10 2539 7 12 C 09 2443 29 65 31 A 10 1212 510 306 540 a 11 933 458 409 768 w 12 906 381 545 736 w |
| Type: | Heterodimer |
| Binding TFs: | Q9SW63 (AP2 domain) Q9SW63 |
| Binding Sites: | MA0980.2.1 MA0980.2.10 / MA0980.2.8 MA0980.2.11 / MA0980.2.9 MA0980.2.12 MA0980.2.10 / MA0980.2.13 MA0980.2.14 MA0980.2.11 / MA0980.2.15 MA0980.2.16 MA0980.2.17 MA0980.2.18 MA0980.2.12 / MA0980.2.19 MA0980.2.2 MA0980.2.13 / MA0980.2.20 MA0980.2.3 MA0980.2.4 MA0980.2.5 MA0980.2.6 MA0980.2.7 MA0980.2.7 / MA0980.2.8 MA0980.2.9 MA0980.2.14 MA0980.2.15 MA0980.2.16 MA0980.2.17 MA0980.2.18 MA0980.2.19 MA0980.2.20 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.