DNA Binding Motif

						

			
Accessions: UP00061A_2 (UniPROBE 20160601)

			
Names: fkh-6, fkh6, Fkhl11, forkhead box L1, Forkhead box protein L1, Forkhead-related protein FKHL11, Foxl1, FREAC7, Transcription factor FKH-6
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: awatyawAACAAmamm
Weblogo: 
PSSM: P0      A      C      G      T
01   0.56   0.12   0.08   0.23      a
02   0.32   0.15   0.18   0.35      w
03   0.48   0.12   0.17   0.23      a
04   0.20   0.16   0.19   0.45      t
05   0.03   0.57   0.02   0.38      y
06   0.64   0.17   0.02   0.17      a
07   0.57   0.11   0.01   0.31      w
08   0.89   0.05   0.01   0.04      A
09   0.91   0.03   0.03   0.03      A
10   0.01   0.74   0.02   0.22      C
11   0.91   0.02   0.03   0.04      A
12   0.70   0.07   0.08   0.15      A
13   0.45   0.32   0.06   0.18      m
14   0.59   0.13   0.14   0.14      a
15   0.26   0.33   0.17   0.24      m
16   0.36   0.33   0.15   0.16      m
Binding TFs: UP00061A (Fork head domain)
Binding Sites: GTAAACAA
AATAAACA
AATGTTTA
AGTAAACA
AGTAAATA
ATAAACAT
ATGTTTAC
ATTGTTTA
CATAAACA
CGTAAACA
GATAAACA
GTAAACAC
GTAAATAA
GTTGTTTA
TAAACAAA
TAAACATA
TAAATAAA
TATAAACA
TATTTACA
TGTAAACA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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