DNA Binding Motif

						

			
Accessions: MA0386.1 (JASPAR 2024)

			
Names: SPT15
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: vwhtaGrwATATATAtwsrwk
Weblogo: 
PSSM: P0      A      C      G      T
01    277    250    386     84      v
02    337    191    147    323      w
03    253    345     88    313      h
04    160    200    154    484      t
05    545    139    154    160      a
06    115     98    701     84      G
07    287    198    266    247      r
08    332    110     27    529      w
09    907      7     25     59      A
10     12      7     23    955      T
11    981      2      4     12      A
12     38      1      5    954      T
13    970      2      6     20      A
14     44      4      3    947      T
15    883     10     24     81      A
16    186     62     94    657      t
17    264    122    129    483      w
18    137    380    369    112      s
19    266    228    384    121      r
20    350    176    172    301      w
21    248    193    270    286      k
Type: Heterodimer
Binding TFs: P13393 (Transcription factor TFIID (or TATA-binding protein, TBP))
P13393
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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