DNA Binding Motif

						

			
Accessions: GCM1_HOXB13_2_3 (HumanTF2 1.0)

			
Names: GCM1_HOXB13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: rCCCgyAysymrTAAm
Weblogo: 
PSSM: P0      A      C      G      T
01    106     10     56     25      r
02      6    197      6      0      C
03     21    197      5      0      C
04     35    197      8     23      C
05     27     80    197     76      g
06      0    197      0    102      y
07    197     24     40     25      A
08     22     90     18     67      y
09     17    100     59     22      s
10      3    102     26     67      y
11     78    119      5     42      m
12    107     14     90     33      r
13     11      0      8    197      T
14    197     20     14     36      A
15    197     22     18     31      A
16    197     82     12      0      m
Type: Heterodimer
Binding TFs: GCM1_TF1 (GCM motif protein)
HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.