DNA Binding Motif

						

			
Accessions: ZNF713_3 (HT-SELEX2 May2017), UN0217.1 (JASPAR 2024)

			
Names: ZNF713
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 19
Consensus: tmGACGACTGCCACGAAAs
Weblogo: 
PSSM: P0      A      C      G      T
01   5127   4349   4409   7290      t
02   8236  10560    643   2793      m
03    899      6  20667      6      G
04  21158     40     10      0      A
05   2183  18617    996   4504      C
06   4237     12  20248      8      G
07  21160     42     11      0      A
08   1110  18070   4214    262      C
09     15    321     77  20913      T
10      0     11  21168     15      G
11     16  21169     19     11      C
12     34  21064     13    111      C
13  21154     38     15    207      A
14     87  21051    276     17      C
15    127     17  21071      8      G
16  21156     17     12      4      A
17  21103     20    103     32      A
18  18256    482   2233   1508      A
19   5007   6409   8015   1745      s
Type: Heterodimer
Binding TFs: ZNF713 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q8N859 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q8N859 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q8N859
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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